peakingduck
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Contents:
Installation
1D Data Processing
Peak Finding
Extending in C++
Extending with Python
peakingduck Python Package
peakingduck Header Only Library
peakingduck
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Index
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Index
A
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C
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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R
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S
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T
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V
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W
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X
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Y
A
addlegend() (peakingduck.plotting.PlotAdapter method)
append() (peakingduck.core.IProcessManager method)
(peakingduck.core.PySimpleProcessManager method)
(peakingduck.core.SimpleProcessManager method)
C
ChunkedSimplePeakFinder (class in peakingduck.core)
ChunkedThresholdPeakFilter (class in peakingduck.core)
combine() (in module peakingduck.core)
E
engine() (peakingduck.plotting.PlotAdapter property)
enginename() (peakingduck.plotting.PlotAdapter property)
estimateBackground() (peakingduck.core.SpectrumChannelBased method)
(peakingduck.core.SpectrumEnergyBased method)
exp() (peakingduck.core.NumericalData method)
F
find() (peakingduck.core.ChunkedSimplePeakFinder method)
(peakingduck.core.IPeakFinder method)
(peakingduck.core.ScipyPeakFinder method)
(peakingduck.core.SimplePeakFinder method)
(peakingduck.core.WindowPeakFinder method)
from_csv() (in module peakingduck.io)
from_list() (peakingduck.core.IntegerData method)
(peakingduck.core.NumericalData method)
G
get_window() (in module peakingduck.util)
getplotvalues() (in module peakingduck.plotting)
GlobalThresholdPeakFilter (class in peakingduck.core)
go() (peakingduck.core.IProcess method)
(peakingduck.core.SavitzkyGolaySmoother method)
(peakingduck.core.WeightedMovingAverageNative method)
grid() (peakingduck.plotting.PlotAdapter method)
H
Histogram (class in peakingduck.core)
HistogramChannelBased (class in peakingduck.core)
I
index (peakingduck.core.PeakInfo attribute)
index() (peakingduck.core.PeakInfo property)
IntegerData (class in peakingduck.core)
inverseLLS() (peakingduck.core.NumericalData method)
inverseLLSInPlace() (peakingduck.core.NumericalData method)
IPeakFinder (class in peakingduck.core)
IProcess (class in peakingduck.core)
IProcessManager (class in peakingduck.core)
L
lineplot() (peakingduck.plotting.LinePlotAdapter method)
LinePlotAdapter (class in peakingduck.plotting)
LLS() (peakingduck.core.NumericalData method)
LLSInPlace() (peakingduck.core.NumericalData method)
log() (peakingduck.core.NumericalData method)
M
matplotlib (in module peakingduck.plotting)
maxCoeff() (peakingduck.core.IntegerData method)
(peakingduck.core.NumericalData method)
mean() (peakingduck.core.NumericalData method)
midpoint() (peakingduck.core.NumericalData method)
midpointInPlace() (peakingduck.core.NumericalData method)
minCoeff() (peakingduck.core.IntegerData method)
(peakingduck.core.NumericalData method)
MovingAveragePeakFilter (class in peakingduck.core)
MovingAverageSmoother (class in peakingduck.core)
N
newcanvas() (peakingduck.plotting.PlotAdapter method)
np (in module peakingduck.core)
NumericalData (class in peakingduck.core)
O
operator* (C++ function)
operator+ (C++ function)
operator- (C++ function)
operator/ (C++ function)
P
PeakInfo (class in peakingduck.core)
PEAKINGDUCK (module)
peakingduck (module)
peakingduck.core (module)
peakingduck.io (module)
peakingduck.plotting (module)
peakingduck.util (module)
peakingduck::constants::PI (C++ member)
peakingduck::core::Array1D (C++ type)
peakingduck::core::Array1Dd (C++ type)
peakingduck::core::Array1Df (C++ type)
peakingduck::core::Array1Di (C++ type)
peakingduck::core::ArrayTypeDynamic (C++ member)
peakingduck::core::ChunkedThresholdPeakFilter (C++ class)
peakingduck::core::ChunkedThresholdPeakFilter::ChunkedThresholdPeakFilter (C++ function)
peakingduck::core::ChunkedThresholdPeakFilter::go (C++ function)
peakingduck::core::combine (C++ function)
peakingduck::core::crtp (C++ class)
peakingduck::core::crtp::underlying (C++ function)
,
[1]
peakingduck::core::DefaultType (C++ type)
peakingduck::core::GlobalThresholdPeakFilter (C++ class)
peakingduck::core::GlobalThresholdPeakFilter::GlobalThresholdPeakFilter (C++ function)
peakingduck::core::GlobalThresholdPeakFilter::go (C++ function)
peakingduck::core::Histogram (C++ class)
peakingduck::core::Histogram::_X (C++ member)
peakingduck::core::Histogram::_Y (C++ member)
peakingduck::core::Histogram::Histogram (C++ function)
,
[1]
,
[2]
,
[3]
peakingduck::core::Histogram::operator= (C++ function)
,
[1]
peakingduck::core::Histogram::X (C++ function)
peakingduck::core::Histogram::Y (C++ function)
peakingduck::core::Histogram::~Histogram (C++ function)
peakingduck::core::IPeakFinder (C++ class)
peakingduck::core::IPeakFinder::find (C++ function)
peakingduck::core::IPeakFinder::~IPeakFinder (C++ function)
peakingduck::core::IProcess (C++ class)
peakingduck::core::IProcess::go (C++ function)
peakingduck::core::IProcess::~IProcess (C++ function)
peakingduck::core::IProcessManager (C++ class)
peakingduck::core::IProcessManager::append (C++ function)
peakingduck::core::IProcessManager::reset (C++ function)
peakingduck::core::IProcessManager::run (C++ function)
peakingduck::core::IProcessManager::size (C++ function)
peakingduck::core::IProcessManager::~IProcessManager (C++ function)
peakingduck::core::MovingAveragePeakFilter (C++ class)
peakingduck::core::MovingAveragePeakFilter::go (C++ function)
peakingduck::core::MovingAveragePeakFilter::MovingAveragePeakFilter (C++ function)
peakingduck::core::MovingAverageSmoother (C++ class)
peakingduck::core::MovingAverageSmoother::go (C++ function)
peakingduck::core::MovingAverageSmoother::MovingAverageSmoother (C++ function)
peakingduck::core::NumericalData (C++ class)
peakingduck::core::NumericalData::from_vector (C++ function)
peakingduck::core::NumericalData::NumericalData (C++ function)
,
[1]
,
[2]
peakingduck::core::NumericalData::operator() (C++ function)
peakingduck::core::NumericalData::operator* (C++ function)
,
[1]
peakingduck::core::NumericalData::operator*= (C++ function)
peakingduck::core::NumericalData::operator+ (C++ function)
,
[1]
peakingduck::core::NumericalData::operator+= (C++ function)
peakingduck::core::NumericalData::operator- (C++ function)
,
[1]
peakingduck::core::NumericalData::operator-= (C++ function)
peakingduck::core::NumericalData::operator/ (C++ function)
,
[1]
peakingduck::core::NumericalData::operator/= (C++ function)
peakingduck::core::NumericalData::operator= (C++ function)
,
[1]
,
[2]
,
[3]
peakingduck::core::NumericalData::ramp (C++ function)
peakingduck::core::NumericalData::rampInPlace (C++ function)
peakingduck::core::NumericalData::slice (C++ function)
peakingduck::core::NumericalData::to_vector (C++ function)
peakingduck::core::NumericalData<T, Size>::BaseEigenArray (C++ type)
peakingduck::core::NumericalData<T, Size>::value_type (C++ type)
peakingduck::core::NumericalFunctions (C++ class)
peakingduck::core::NumericalFunctions::gradient (C++ function)
peakingduck::core::NumericalFunctions::gradientInPlace (C++ function)
peakingduck::core::NumericalFunctions::inverseLLS (C++ function)
peakingduck::core::NumericalFunctions::inverseLLSInPlace (C++ function)
peakingduck::core::NumericalFunctions::LLS (C++ function)
peakingduck::core::NumericalFunctions::LLSInPlace (C++ function)
peakingduck::core::NumericalFunctions::midpoint (C++ function)
peakingduck::core::NumericalFunctions::midpointInPlace (C++ function)
peakingduck::core::NumericalFunctions::snip (C++ function)
,
[1]
peakingduck::core::NumericalFunctions::snipInPlace (C++ function)
peakingduck::core::NumericalFunctions::stddev (C++ function)
peakingduck::core::NumericalFunctions::symmetricNeighbourOp (C++ function)
peakingduck::core::PeakInfo (C++ class)
peakingduck::core::PeakInfo::index (C++ member)
peakingduck::core::PeakInfo::PeakInfo (C++ function)
peakingduck::core::PeakInfo::value (C++ member)
peakingduck::core::PeakInfoWithProp (C++ class)
peakingduck::core::PeakInfoWithProp::PeakInfoWithProp (C++ function)
peakingduck::core::PeakInfoWithProp::property (C++ member)
peakingduck::core::PeakList (C++ type)
peakingduck::core::SimplePeakFinder (C++ class)
peakingduck::core::SimplePeakFinder::find (C++ function)
peakingduck::core::SimplePeakFinder::SimplePeakFinder (C++ function)
peakingduck::core::SimplePeakFinder::~SimplePeakFinder (C++ function)
peakingduck::core::SimpleProcessManager (C++ class)
peakingduck::core::SimpleProcessManager::append (C++ function)
peakingduck::core::SimpleProcessManager::reset (C++ function)
peakingduck::core::SimpleProcessManager::run (C++ function)
peakingduck::core::SimpleProcessManager::size (C++ function)
peakingduck::core::SimpleProcessManager::~SimpleProcessManager (C++ function)
peakingduck::core::Spectrum (C++ class)
peakingduck::core::Spectrum::estimateBackground (C++ function)
peakingduck::core::Spectrum::removeBackground (C++ function)
peakingduck::core::WeightedMovingAverageSmoother (C++ class)
peakingduck::core::WeightedMovingAverageSmoother::go (C++ function)
peakingduck::core::WeightedMovingAverageSmoother::WeightedMovingAverageSmoother (C++ function)
peakingduck::core::window (C++ function)
peakingduck::io::DEFAULTDELIMITER (C++ member)
peakingduck::io::Deserialize (C++ function)
peakingduck::io::operator>> (C++ function)
peakingduck::PeakingDuckDBConnectionInvalidException (C++ class)
peakingduck::PeakingDuckDBConnectionInvalidException::_what (C++ member)
peakingduck::PeakingDuckDBConnectionInvalidException::PeakingDuckDBConnectionInvalidException (C++ function)
peakingduck::PeakingDuckDBConnectionInvalidException::what (C++ function)
peakingduck::PeakingDuckDBConnectionInvalidException::~PeakingDuckDBConnectionInvalidException (C++ function)
peakingduck::PeakingDuckException (C++ class)
peakingduck::PeakingDuckException::_what (C++ member)
peakingduck::PeakingDuckException::PeakingDuckException (C++ function)
peakingduck::PeakingDuckException::what (C++ function)
peakingduck::PeakingDuckException::~PeakingDuckException (C++ function)
peakingduck::PeakingDuckFileFormatReadException (C++ class)
peakingduck::PeakingDuckFileFormatReadException::PeakingDuckFileFormatReadException (C++ function)
peakingduck::PeakingDuckFileFormatReadException::what (C++ function)
peakingduck::PeakingDuckFileFormatReadException::~PeakingDuckFileFormatReadException (C++ function)
peakingduck::PeakingDuckMapKeyNotFoundException (C++ class)
peakingduck::PeakingDuckMapKeyNotFoundException::PeakingDuckMapKeyNotFoundException (C++ function)
peakingduck::PeakingDuckMapKeyNotFoundException::what (C++ function)
peakingduck::PeakingDuckMapKeyNotFoundException::~PeakingDuckMapKeyNotFoundException (C++ function)
peakingduck::util::file_exists (C++ function)
peakingduck::util::file_exists_quick (C++ function)
peakingduck::util::get_window (C++ function)
peakingduck::util::ltrim (C++ function)
,
[1]
peakingduck::util::range (C++ class)
peakingduck::util::range::begin (C++ function)
,
[1]
peakingduck::util::range::end (C++ function)
,
[1]
peakingduck::util::range::iterator (C++ class)
peakingduck::util::range<IntegerType, ibegin, iend, step>::iterator::difference_type (C++ type)
peakingduck::util::range<IntegerType, ibegin, iend, step>::iterator::iterator (C++ function)
peakingduck::util::range<IntegerType, ibegin, iend, step>::iterator::iterator_category (C++ type)
peakingduck::util::range<IntegerType, ibegin, iend, step>::iterator::operator IntegerType (C++ function)
peakingduck::util::range<IntegerType, ibegin, iend, step>::iterator::operator IntegerType& (C++ function)
peakingduck::util::range<IntegerType, ibegin, iend, step>::iterator::operator!= (C++ function)
peakingduck::util::range<IntegerType, ibegin, iend, step>::iterator::operator* (C++ function)
peakingduck::util::range<IntegerType, ibegin, iend, step>::iterator::operator++ (C++ function)
,
[1]
peakingduck::util::range<IntegerType, ibegin, iend, step>::iterator::operator-> (C++ function)
peakingduck::util::range<IntegerType, ibegin, iend, step>::iterator::operator== (C++ function)
peakingduck::util::range<IntegerType, ibegin, iend, step>::iterator::pointer (C++ type)
peakingduck::util::range<IntegerType, ibegin, iend, step>::iterator::reference (C++ type)
peakingduck::util::range<IntegerType, ibegin, iend, step>::iterator::size_type (C++ type)
peakingduck::util::range<IntegerType, ibegin, iend, step>::iterator::value_type (C++ type)
peakingduck::util::read_stream_into_string (C++ function)
peakingduck::util::rrange (C++ class)
peakingduck::util::rrange::begin (C++ function)
,
[1]
peakingduck::util::rrange::end (C++ function)
,
[1]
peakingduck::util::rrange::iterator (C++ class)
peakingduck::util::rrange::rrange (C++ function)
peakingduck::util::rrange<IntegerType>::iterator::difference_type (C++ type)
peakingduck::util::rrange<IntegerType>::iterator::iterator (C++ function)
peakingduck::util::rrange<IntegerType>::iterator::iterator_category (C++ type)
peakingduck::util::rrange<IntegerType>::iterator::operator IntegerType (C++ function)
peakingduck::util::rrange<IntegerType>::iterator::operator IntegerType& (C++ function)
peakingduck::util::rrange<IntegerType>::iterator::operator!= (C++ function)
peakingduck::util::rrange<IntegerType>::iterator::operator* (C++ function)
peakingduck::util::rrange<IntegerType>::iterator::operator++ (C++ function)
,
[1]
peakingduck::util::rrange<IntegerType>::iterator::operator-> (C++ function)
peakingduck::util::rrange<IntegerType>::iterator::operator== (C++ function)
peakingduck::util::rrange<IntegerType>::iterator::pointer (C++ type)
peakingduck::util::rrange<IntegerType>::iterator::reference (C++ type)
peakingduck::util::rrange<IntegerType>::iterator::size_type (C++ type)
peakingduck::util::rrange<IntegerType>::iterator::value_type (C++ type)
peakingduck::util::rtrim (C++ function)
,
[1]
peakingduck::util::split (C++ function)
peakingduck::util::trim (C++ function)
peakwindow() (in module peakingduck.core)
PlotAdapter (class in peakingduck.plotting)
PLT (in module peakingduck.plotting)
pow() (peakingduck.core.NumericalData method)
PySimpleProcessManager (class in peakingduck.core)
R
ramp() (peakingduck.core.IntegerData method)
(peakingduck.core.NumericalData method)
rampInPlace() (peakingduck.core.IntegerData method)
(peakingduck.core.NumericalData method)
removeBackground() (peakingduck.core.SpectrumChannelBased method)
(peakingduck.core.SpectrumEnergyBased method)
reset() (peakingduck.core.IProcessManager method)
(peakingduck.core.SimpleProcessManager method)
reverse() (peakingduck.core.IntegerData method)
(peakingduck.core.NumericalData method)
reverseInPlace() (peakingduck.core.IntegerData method)
(peakingduck.core.NumericalData method)
run() (peakingduck.core.IProcessManager method)
(peakingduck.core.PySimpleProcessManager method)
(peakingduck.core.SimpleProcessManager method)
S
SavitzkyGolaySmoother (class in peakingduck.core)
scipy (in module peakingduck.core)
ScipyPeakFinder (class in peakingduck.core)
show() (peakingduck.plotting.PlotAdapter method)
signal (in module peakingduck.core)
SimplePeakFinder (class in peakingduck.core)
SimpleProcessManager (class in peakingduck.core)
slice() (peakingduck.core.IntegerData method)
(peakingduck.core.NumericalData method)
snip() (peakingduck.core.NumericalData method)
SpectrumChannelBased (class in peakingduck.core)
SpectrumEnergyBased (class in peakingduck.core)
sqrt() (peakingduck.core.NumericalData method)
square() (peakingduck.core.NumericalData method)
stddev() (peakingduck.core.NumericalData method)
sum() (peakingduck.core.IntegerData method)
(peakingduck.core.NumericalData method)
T
to_list() (peakingduck.core.IntegerData method)
(peakingduck.core.NumericalData method)
V
value (peakingduck.core.PeakInfo attribute)
value() (peakingduck.core.PeakInfo property)
W
WeightedMovingAverageNative (class in peakingduck.core)
WeightedMovingAverageSmoother (class in peakingduck.core)
window() (in module peakingduck.core)
WindowPeakFinder (class in peakingduck.core)
X
X() (peakingduck.core.Histogram property)
(peakingduck.core.HistogramChannelBased property)
Y
Y() (peakingduck.core.Histogram property)
(peakingduck.core.HistogramChannelBased property)
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